Hmm. I've re-read the question more carefully.
It says to treat the runner as a point mass, m and so implicitly assumes that the force she applies to the mass comes from outside the mass. ie her leg muscles are outside of herself, though their mass is included within! In this case her (massless) muscles do indeed provide an upward force on her (massive) point body, and we can think of the force as being upward!
So, choose your preferred weirdness: pushing the Earth down or massless legs pushing a point body up!
I think the latter is a dangerous way of looking at this as it is may too easily lead to confusion in more complicated situations where there could be several internal forces that actually contribute nothing to the motion of the object in question (a point has no internal structure).
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